PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G126700.1
Common NameB456_013G126700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 239aa    MW: 25891.1 Da    PI: 8.2199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G126700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-0584106123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k Fs++  L  H++ H
  Gorai.013G126700.1  84 FTCGFCSKQFSTSQALGGHQNAH 106
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-681111No hitNo description
Gene3DG3DSA:3.30.160.603.9E-582110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.67684111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
METLCVKLPC SSDTCSISPP SNGETQNMMN ATKLKEKASV DDVHEHPKPS GFHLPLGDES  60
VELRLSSMIS SPKPQQQSSK GRAFTCGFCS KQFSTSQALG GHQNAHKQER AIAKRRKEMD  120
VGALAPQQYP FYSYSTLSQG SLYGSFNRSL GIKMDAMIQK PPISGYPWNS LGYRFGHGGI  180
VMDGLQSQKS SVLPTPASTI APKKWTSSID FHVSASEGYH RNDAADDDDS GLDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461942.11e-179PREDICTED: zinc finger protein KNUCKLES-like
TrEMBLA0A0D2VEI01e-179A0A0D2VEI0_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-21C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]